第一及通讯作者论文：
2018
Gao J B., Zhou W J*., Liu Y T., Zhu, J., Sha L Q., Song Q H., Ji H L., Lin Y X., Fei X H., Bai X L., Zhang X, Deng Y., Deng X B., Yu G R., Zhang J H., Zheng, X H., Grace J., Zhang Y P*. Effects of litter inputs on N2O emissions from a tropical rainforest in southwest China, Ecosystems, 2018, 3(5):1013-1026. (SCI, Q1).
2016
Zhou W.-J., Lu H.-Z., Zhang Y.-P., Sha L.-Q., Schaefer D., Song Q.-H., Deng Y., Deng X.-B.. Hydrologically transported dissolved organic carbon influences soil respiration in a tropical rainforest. Biogeosciences, 2016, 13(19): 1–11. (SCI, Top10)
Zhou, W.-J. Ji H.-L., Zhu J., Zhang Y.-P., Sha L.-Q. , Liu Y.-T., Zhang X., Zhao W., Dong Y.-X., Bai X.L., Lin Y.-X.，Zhang J.-H., Zheng X.-H.. The effects of nitrogen fertilization on N2O emissions from a rubber plantation. Sci. Rep. 2016, 6, 28230; doi: 10.1038/srep28230. (SCI, Q1)
周文君，鲁志云，武传胜，温韩东，张一平，刘玉洪，沙丽清. 哀牢山亚热带森林逆向演替过程中土壤碳贮量的影响.云南大学学报, 2016, 38(1):Doi 10.7540/j.ynu.20150477
周文君，沙丽清，张一平，宋清海，刘运通，邓晓保，邓云. 热带季节雨林土壤剖面溶解态有机碳与氮特征及其影响因子, 北京林业大学学报（自然科学报）, 2016, DOI:10.13332/j.1000-1522.20150238
2015
Zhou W.-J., Sha L.-Q., Schaefer, D.A., Zhang Y.-P., Song, Q.-H., Tan Z.-H., Deng Y., Deng X.- B., Guan H.-L., Direct effects of litter decomposition on soil dissolved organic carbon and nitrogen in a tropical rainforest, Soil Biology and Biochemistry, 2015, 81: 255-258. (SCI, Top10)
2013
Zhou W.-J., Zhang Y.-P., Douglas A., Sha L.-Q., Deng Y., Deng X.-B., Dai K.-J.. The role of stream water carbon dynamics and export in the carbon balance of a tropical seasonal rainforest, Southwest China. PLOS ONE, 2013,8(2): e56646,doi:10.1371/journal.pone.0056646. (SCI, Q1)
2011
周文君，张一平，沙丽清，刘文杰，邓晓保．西双版纳人工橡胶林集水区径流特征．水土保持学报，2011，25(4)：54-58，64.
2008
周文君，沙丽清．西双版纳橡胶林土壤呼吸季节变化及其与影响因子的关系．山地学报，2008，26（3）：317-325.
2005
周文君，沈有信，刘文耀，滇中云南松根际土与非根际土磷的有效性，中南林学院学报，2005.01.01，25（3）：25-29
合作发表论文
2019
Ruiying chang, Wen-Jun Zhou, Yunting Fang, Haijian Bing, Xiangyang Su, Genxu Wang. Anthropogenic nitrogen deposition increases soil carbon by enhancing new carbon of the soil aggregate formation，Journal of Geophysical Research –Biogeosciences, DOI: 10.1029/2018JG004877 (SCI, Q1)
2018
Liu Y.T*, Li J., Jin Y.Q., Zhang Y.P*, Sha L.Q., Grace J., Song Q.H., Zhou W.J., Chen A.G., Li P.G., Zhang S.B. The influence of drought strength on soil respiration in a woody savanna ecosystem, southwest China Plant and Soil, 428(1-2), 321-333(SCI, Top10)
Lin, Y.X., Grace, J., Zhao, W., Dong, Y.X., Zhang, X., Zhou, L.G., Fei, X.H., Jin, Y.Q., Li, J., Niazzam, S.M., Balasubramanian, D., Zhou, W.J., Liu, Y.T., Song, Q.H., Sha, L.Q., Zhang, Y.P.Water-use efficiency and its relationship with environmental and biological factors in a rubber plantation, Journal of Hydrology, 563, 273-282 (SCI, Q1)
Fei X H., Song Q H, Zhang Y P., Liu Y T., Sha L Q., Yu,G R., Zhang,L M., Liang, N S., Duan,C Q.,Deng Y., Wu,C S., Lu,Z Y., Luo,K., Chen,A G.,Xu K., Liu W W., Hua H., Jin Y Q., Zhou R W., Li J., Lin Y X., Zhou L G., Fu Y., Bai X L., Tang X H., Gao J B., Zhou W J., Grace J..Carbon exchanges and their responses to temperature and precipitation in forest ecosystems of Yunnan, Southwest China,Science of The Total Environment. 616-617: 824-840 (SCI, Top10)
2017
Fei X H., Jin Y Q., Zhang Y P, Sha L Q., Liu Y T., Song Q H, Zhou W J., Liang N S., Yu G R., Zhang, L M., Zhou, R W., Li J., Zhang S B., Li P G.Eddy covariance and biometric measurement show that a savanna ecosystem in Southwest China is a carbon sink. Scientific Reports,2017,doi: 10.1038/srep41025. (SCI, Q1)
Song Q H., Fei X H., Zhang Y P, Sha L Q., Wu C S., Lu Z Y., Luo K., Zhou W J., Liu Y T., Gao J B. Snow damage strongly reduces the carbon sink strength in a primary subtropical evergreen broadleaved forest. Environmental Research Letters, 2017 (12) :104014(SCI, Top10)
Song Q H., Braeckevelt E., Zhang Y P.,* Liu Y H., Sha L Q., Zhou W J., Liu Y T., Wu C S., Lu Z Y., Otto K. Evapotranspiration from a primary subtropical evergreen forest in SW China. Ecohydrology,2017,DOI: 10.1002/eco.1826. (SCI, Q2)
Song Q H., Fei X H., Zhang Y P.,* Sha L Q., Liu Y T., Zhou W J., Wu C S., Lu Z Y., Luo K., Gao J B. Water use efficiency in a primary subtropical evergreen forest in Southwest China, Scientific Reports,2017, DOI: 10.1038/srep43031. (SCI,Q 1)
Song Q H., Zhang Y P.,* Sha L Q., Deng Y., Zhou W J., Liu Y T., Wu C S., Lu Z Y., Zhang S B., Li P G.Canopy temperature variability in a tropical rainforest, subtropical evergreen forest, and savanna forest in Southwest China, iForest - Biogeosciences and Forestry.2017, DOI: 10.3832/ifor2223-010.
Song Q H., Zhang Y P.,* Zhou W J., Liu Y T., Deng Y., Sha L Q. Comparison of infrared canopy temperature in a rubber plantation and tropical rain forest, International Journal of Biometeorology, 2017,DOI: 10.00140. (SCI,Q 1)
2016
Song Qing-Hai, Elisa Braeckevelt,Yi-Ping Zhang,Li-Qing Sha,Wen-Jun Zhou,Yun-Tong Liu, Chuan-Sheng Wu,Zhi-Yun Lu,Otto Klemm. Evapotranspiration from a primary subtropical evergreen forest in Southwest China. Ecohydrology, 2016, DOI: 10.1002/eco.1826(SCI,Q2)
2014
Song Q.-H., Tan Z.-H., Zhang Y.-P., Sha L.-Q., Deng X.-B., Deng Y., Zhou W.-J., Zhao J.-F., Zhao J.-B., Zhang X., Zhao W., Yu G.-R., Sun X.-M., Liang N.-S., Yang L.-Y.. Do the rubber plantations in tropical China act as large carbon sinks? iForest-Biogeosciences and Forestry, 2014, 7: 42-47，doi: 10.3832/ifor0891-007. (SCI,Q 3)
2013
姬红利, 周文君, 张一平，沙丽清. 云南土壤色度与海拔及气候的关系研究. 云南大学学报(自然科学版), 2013, 35(S2): 352-358.
Song Q.-H., Lin H., Zhang Y-P., Tan Z.-H., Zhao J.-F., Zhao J-B., Zhang X., Zhou W.-J., Yu L., Yang L.-Y., Yu G.-R., Sun X.-M., The effect of drought stress on self-organisation in a seasonal tropical rainforest, Ecological Modelling, 2013, 265:136-139. (SCI,Q2)
2012
姚玉刚，张一平，于贵瑞，宋清海，谭正洪，周文君．热带季节雨林近地层CO2堆积的气象条件分析．应用基础与工程科学学报，2012，Doi:10.3969/j. issn.1005-0930.2012.02.000.
余雷，张一平，沙丽清，谭正洪，宋清海，周文君，武传胜.哀牢山亚热带常绿阔叶林内外地温分布特征. 生态学杂志，2012，31(07): 1633-1638.
2011
Tan ZH, Zhang YP, Song QH, Liu WJ, Deng XB, Tang JW, Deng Y, Zhou WJ, Yang LY, Yu GR. Rubber plantations act as water pumps in tropical China. Geophysical Research Letters, 2011, 38: L24406, doi:10.1029/2011GL050006. (SCI,Q1)
高富，周文君，张一平．日雨量数据估算西双版纳勐仑区域降雨侵蚀力动态．黑龙江农业科学，2011，(12)：56-60，64.
2009
戴开结，何方，沈有信 ， ，邓云，张建华，周文君不同磷源对云南松幼苗生长和磷吸收量的影响，生态学报，2009.8.15，（08）：4978~4983
2006
戴开结，何方，沈有信，邓云，周文君，崔景云，低磷胁迫下云南松幼苗的生物量及其分配，广西植物，2006.01.01，（02）：183~186
邓云，官会林，戴开结，周文君，沈有信.不同供磷水平对云南松幼苗形态建成及根际有机酸分泌的影响，云南大学学报(自然科学版)，2006.01.01,（04）：358~363
戴开结，何方，沈有信，周文君，李扬苹，唐丽，云南松研究综述，中南林学院学报，2006.01.01，（02）：138~142
2005
沈有信，周文君，刘文耀，戴开结，云南松根际与非根际磷酸酶活性与磷的有效性，生态环境，2005.01.01，14（1）：91~94
戴开结，沈有信 ，邓云，李扬苹，付洁，(*)周文君云南松根际pH与不同磷水平下云南松幼苗根际pH变化，西北植物学报，2005.01.01，（12）：2490~2494
戴开结，沈有信 ，邓云，刘文耀，(*)周文君在控制条件下云南松幼苗根系对低磷胁迫的响应，生态学报，2005.01.01，25（9）：2423~2426
